# *Staphylococcus aureus*

## Usage

The workflow is designed for analyzing of *Staphylococcus aureus*.

## Supported analysis

The workflow includes the following analysis in addition to species prediction and various methods for assessing the sequencing quality,

- Antibiotic resistance prediction
- Disinfectant resistance
- Prediction of virulence factors
- Plasmid detection
- MLST
- cgMLST
- SCCmec type
- spa type (for ONT workflow)


## Software versions

```{csv-table} Versions of softwares and containers used by the *Staphylococcus aureus* workflow.
:file: staphylococcus_aureus_sw.csv

```