# *Streptococcus pyogenes*

## Usage

The workflow is designed for analyzing of *Streptococcus pyogenes*.

## Supported analysis

The workflow includes the following analysis in addition to species prediction and various methods for assessing the sequencing quality,

- Antibiotic resistance prediction
- Disinfectant resistance
- EMM typing
- Prediction of virulence factors
- Plasmid detection
- MLST
- cgMLST


## Software versions

```{csv-table} Versions of softwares and containers used by the *Streptococcus pyogenes* workflow.
:file: streptococcus_pyogenes_sw.csv

```